PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097503.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ZF-HD
Protein Properties Length: 249aa    MW: 27484.5 Da    PI: 7.2027
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.98.9e-3250104358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     k rYkeClkNhA+ +GghavDGCgEf+++ geegt ++lkCaAC+CHRnFHR+e+e
  XP_011097503.1  50 KSRYKECLKNHAVGIGGHAVDGCGEFIAA-GEEGTLESLKCAACNCHRNFHRKESE 104
                     679*************************9.999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2446105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-2951103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2952102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.31353102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.23E-21175243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-31175244IPR009057Homeodomain-like
TIGRFAMsTIGR015658.8E-28184240IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDFEDQEEEQ EGEVGLGPSY DDSLGNSNST RAAPPKMQSP VEAAPPSLRK SRYKECLKNH  60
AVGIGGHAVD GCGEFIAAGE EGTLESLKCA ACNCHRNFHR KESEAGGAFA FHQHPQQQLL  120
LTHHPHPHFG YRGGPSGYLH VAPPQQQQRA TLLALPSNSG GGGGSGSRDE MEDYYSNPSS  180
SGGKKRFRTK FTQEQKDKML NFAERLGWKI QKQDEEMVQQ FCSELGIKRH VLKVWMHNNK  240
HTLGGESKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-241852421875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097503.10.0PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2592e-70ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLS8DMV21e-117S8DMV2_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA02G04550.24e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-65homeobox protein 22